Commit fb1bfe8b authored by dmattek's avatar dmattek

Bug fixes

parent 5a175891
# Time-course analysis web-app
#### Running the app from the server
## Running the app from the server
The app can be accessed here:
http://pertzlab.unibe.ch:3838/shiny-timecourse-selector/
http://pertzlab.unibe.ch:3838/shiny-timecourse-inspector/
#### Running the app locally
## Running the app locally
Alternatively, after downloading the code, the app can be run within RStudio. Open `server.R` or `ui.R` file, then click "Run App" button with green triangle in the upper right corner of the window with code open.
Following packages need to be installed in order to run the app locally:
......@@ -37,20 +37,18 @@ library(devtools)
```
#### Input file
The app recognizes CSV (comma-separated values) files: data columns separated by a comma, floating point numbers using a dot (full-stop).
## Input file
The app recognises CSV (comma-separated values) files: data columns separated by a comma, floating point numbers using a dot (full-stop).
The data file has to be in a so called long format, where individual time-courses (tracks) are arranged one after another. Note a wide-format where individual tracks are arranged in neighbouring columns is NOT supported!
Sample few lines of the input file:
`"Metadata_Series", "TrackObjects_Label", "Intensity_MeanIntensity_Ratio", "RealTime", "Stim_All_Ch", "Stim_All_S"`
`0, 2, 1149.00311105531, 0, "Ch01: FGF 250 ng/ml 60min pulse", "S00: FGF 250 ng/ml 60min pulse"`
`0, 3, 1160.43905280656, 0, "Ch01: FGF 250 ng/ml 60min pulse", "S00: FGF 250 ng/ml 60min pulse"`
`0, 4, 1303.06046656558, 0, "Ch01: FGF 250 ng/ml 60min pulse", "S00: FGF 250 ng/ml 60min pulse"`
```
"Metadata_Series", "TrackObjects_Label", "Intensity_MeanIntensity_Ratio", "RealTime", "Stim_All_Ch", "Stim_All_S"
0, 2, 1149.00311105531, 0, "Ch01: FGF 250 ng/ml 60min pulse", "S00: FGF 250 ng/ml 60min pulse"
0, 3, 1160.43905280656, 0, "Ch01: FGF 250 ng/ml 60min pulse", "S00: FGF 250 ng/ml 60min pulse"
0, 4, 1303.06046656558, 0, "Ch01: FGF 250 ng/ml 60min pulse", "S00: FGF 250 ng/ml 60min pulse"
```
The first row should include column headers. Necessary columns include:
......
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