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Commit d11f606f authored by Maciej Dobrzynski's avatar Maciej Dobrzynski
Browse files

Removed: option to manually assign cluster colours.

Various bug fixes.
parent 5f86a0fd
......@@ -18,7 +18,7 @@ require(Hmisc) # for CI calculation
# if true, additional output printed to R console
DEB = T
# font sizes in pts for plots
# font sizes in pts for plots in the manuscript
# PLOTFONTBASE = 8
# PLOTFONTAXISTEXT = 8
# PLOTFONTAXISTITLE = 8
......
......@@ -245,7 +245,8 @@ modBoxPlot = function(input, output, session,
in.font.strip = PLOTFONTFACETSTRIP,
in.font.legend = PLOTFONTLEGEND) +
theme(legend.position = input$selPlotBoxLegendPos,
axis.text.x = LOCrotatedAxisElementText(as.numeric(input$rBAxisLabelsRotate)))
axis.text.x = LOCrotatedAxisElementText(as.numeric(input$rBAxisLabelsRotate),
size = PLOTFONTAXISTEXT))
return(p.out)
......
......@@ -63,7 +63,8 @@ modClDistPlot = function(input, output, session, in.data, in.cols = NULL, in.fna
in.font.strip = PLOTFONTFACETSTRIP,
in.font.legend = PLOTFONTLEGEND) +
theme(
axis.text.x = LOCrotatedAxisElementText(as.numeric(input$rBAxisLabelsRotate), size = PLOTFONTAXISTEXT)
axis.text.x = LOCrotatedAxisElementText(as.numeric(input$rBAxisLabelsRotate),
size = PLOTFONTAXISTEXT)
)
return(p.out)
......
......@@ -51,8 +51,9 @@ clustHierUI <- function(id, label = "Hierarchical CLustering") {
ticks = TRUE,
round = TRUE
),
checkboxInput(ns('chBPlotHierClAss'), 'Manually assign cluster colours'),
uiOutput(ns('uiPlotHierClAss')),
# These two lines are to manually assign colours to clusters; it doesn't really work well, so skip
#checkboxInput(ns('chBPlotHierClAss'), 'Manually assign cluster colours'),
#uiOutput(ns('uiPlotHierClAss')),
checkboxInput(ns('chBPlotHierClSel'), 'Manually select clusters to display'),
uiOutput(ns('uiPlotHierClSel')),
downloadButton(ns('downCellCl'), 'Download CSV with cell IDs and cluster no.')
......
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