Commit 64478248 authored by dmattek's avatar dmattek
Browse files
parents d379ec6b bb549dbf
...@@ -2,7 +2,7 @@ ...@@ -2,7 +2,7 @@
## Running the app from the server ## Running the app from the server
The app can be accessed here: The app can be accessed here:
http://pertzlab.unibe.ch:3838/shiny-timecourse-inspector/ http://pertzlab.unibe.ch:3838/shiny-timecourse-inspector/ (UniBe VPN only!)
## Running the app locally ## Running the app locally
Alternatively, after downloading the code, the app can be run within RStudio. Open `server.R` or `ui.R` file, then click "Run App" button with green triangle in the upper right corner of the window with code open. Alternatively, after downloading the code, the app can be run within RStudio. Open `server.R` or `ui.R` file, then click "Run App" button with green triangle in the upper right corner of the window with code open.
...@@ -39,6 +39,9 @@ install.packages(c("shiny", "shinyjs", ...@@ -39,6 +39,9 @@ install.packages(c("shiny", "shinyjs",
"MASS", "robust", "pracma")) "MASS", "robust", "pracma"))
``` ```
**Note**
As of July 2018, *sparcl* has been removed from CRAN. If you don't need sparse hierarchical clustering, you can simply comment the line `library(sparcl)` in `server.R` file or install it from the [archive](https://cran.r-project.org/web/packages/sparcl/index.html).
**Additionally**, a time series analysis package need to be installed from [GitHub](https://github.com/dmattek/tca-package): **Additionally**, a time series analysis package need to be installed from [GitHub](https://github.com/dmattek/tca-package):
``` ```
...@@ -52,7 +55,6 @@ install.packages("devtools") ...@@ -52,7 +55,6 @@ install.packages("devtools")
library(devtools) library(devtools)
``` ```
## Input file ## Input file
The app recognises CSV (comma-separated values) files: data columns separated by a comma, floating point numbers using a dot (full-stop). The app recognises CSV (comma-separated values) files: data columns separated by a comma, floating point numbers using a dot (full-stop).
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