Explore projects
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Brain Stimulation Mapping / Automatic_DBS_stim_params_selection
GNU Affero General Public License v3.0Automatic and optimized suggestions of DBS electrode contacts and stimulation amplitudes.
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Nordenström, Simon (ARTORG) / leaddbs
GNU General Public License v3.0 onlyLead-DBS is a MATLAB-toolbox facilitating deep brain stimulation electrode locations and connectomic imaging.
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Songbird / published code / pitch_hps
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Brain Stimulation Mapping / 2019_SubthalamicNucleusSweetSpot
GNU Affero General Public License v3.0Nguyen et al. (2019), Directional stimulation of subthalamic nucleus sweet spot predicts clinical efficacy: Proof of concept. https://doi.org/10.1016/j.brs.2019.05.001 .
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Brain Stimulation Mapping / 2020_DirectionalLocalFieldPotentials
GNU Affero General Public License v3.0Nguyen et al. (2020), Directional local field potentials in the subthalamic nucleus during deep brain implantation of Parkinson's disease patients, https://doi.org/10.3389/fnhum.2020.521282
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Brain Stimulation Mapping / 2020_StructFuncPosterialSubthalamicEssTremor
GNU Affero General Public License v3.0Levy et al. (2020), Structure-function relationship of the posterior subthalamic area with directional deep brain stimulation for essential tremor, https://doi.org/10.1016/j.nicl.2020.102486 .
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Garza et al. (2021), Patient-Specific Anisotropic Volume of Tissue Activated with the Lead-DBS Toolbox, https://doi.org/10.1109/EMBC46164.2021.9629810
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Brain Stimulation Mapping / 2022_SweetSpotToGuideXT
GNU Affero General Public License v3.0Jaradat et al. (2022), Probabilistic Subthalamic Nucleus Stimulation Sweet Spot Integration Into a Commercial Deep Brain Stimulation Programming Software Can Predict Effective Stimulation Parameters, https://doi.org/10.1016/j.neurom.2021.10.026 .
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Songbird / published code / SongDetector
MIT LicenseCode published with paper (please cite): Yamahachi et al. 2020 Undirected singing rate as a non-invasive tool for welfare monitoring in isolated male zebra finches DOI: 10.1371/journal.pone.0236333
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Brain Stimulation Mapping / 2020_ClusterHeadacheMapping
GNU Affero General Public License v3.0Nowacki et al. (2020), Deep Brain Stimulation for Chronic Cluster Headache: Meta-Analysis of Individual Patient Data, https://doi.org/10.1002/ana.25887 .
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Brain Stimulation Mapping / 2022_MulticenterEssentialTremorSweetSpot
GNU Affero General Public License v3.0Nowacki et al. (2022), Probabilistic Mapping Reveals Optimal Stimulation Site in Essential Tremor, https://doi.org/10.1002/ana.26324 .
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Segura-Amil et al. (2023), Programming of subthalamic nucleus deep brain stimulation with hyperdirect pathway and corticospinal tract-guided parameter suggestions, https://doi.org/10.1002/hbm.26390
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Songbird / BirdPark / SdrBirdrec
GNU General Public License v3.0 or laterSDR Birdrec is an open-source software to record FM radio signals transmitted from miniature backpacks attached to songbirds like zebra finches.
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Songbird / published code / recOOrder
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Songbird / BirdPark / dataCompilation
GNU General Public License v3.0 or laterMATLAB script to compile BirdPark source data (birdradio tdms output files and birdvideo mp4 output files) to compiled data (h5 files with metadata and mp4 files with sound).
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Brain Stimulation Mapping / 2025_DBSinMDD
GNU General Public License v3.0 or laterLeserri, Segura-Amil et al. (2023) https://doi.org/10.1007/s00406-023-01683-x
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Songbird / BirdPark / bpTools
GNU General Public License v3.0 or laterMATLAB tools for processing BirdPark recordings. This includes the BirdPark data browser BpBrowser.
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