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MATLAB tools for processing BirdPark recordings. This includes the BirdPark data browser BpBrowser.

MATLAB script to compile BirdPark source data (birdradio tdms output files and birdvideo mp4 output files) to compiled data (h5 files with metadata and mp4 files with sound).

SDR Birdrec is an open-source software to record FM radio signals transmitted from miniature backpacks attached to songbirds like zebra finches.

Leserri, Segura-Amil et al. (2023) https://doi.org/10.1007/s00406-023-01683-x

Segura-Amil et al. (2023), Programming of subthalamic nucleus deep brain stimulation with hyperdirect pathway and corticospinal tract-guided parameter suggestions, https://doi.org/10.1002/hbm.26390

Code published with paper (please cite): Yamahachi et al. 2020 Undirected singing rate as a non-invasive tool for welfare monitoring in isolated male zebra finches DOI: 10.1371/journal.pone.0236333

Nowacki et al. (2020), Deep Brain Stimulation for Chronic Cluster Headache: Meta-Analysis of Individual Patient Data, https://doi.org/10.1002/ana.25887 .

Nguyen et al. (2019), Directional stimulation of subthalamic nucleus sweet spot predicts clinical efficacy: Proof of concept. https://doi.org/10.1016/j.brs.2019.05.001 .

Nowacki et al. (2022), Probabilistic Mapping Reveals Optimal Stimulation Site in Essential Tremor, https://doi.org/10.1002/ana.26324 .

Jaradat et al. (2022), Probabilistic Subthalamic Nucleus Stimulation Sweet Spot Integration Into a Commercial Deep Brain Stimulation Programming Software Can Predict Effective Stimulation Parameters, https://doi.org/10.1016/j.neurom.2021.10.026 .

Garza et al. (2021), Patient-Specific Anisotropic Volume of Tissue Activated with the Lead-DBS Toolbox, https://doi.org/10.1109/EMBC46164.2021.9629810

Levy et al. (2020), Structure-function relationship of the posterior subthalamic area with directional deep brain stimulation for essential tremor, https://doi.org/10.1016/j.nicl.2020.102486 .

Nguyen et al. (2020), Directional local field potentials in the subthalamic nucleus during deep brain implantation of Parkinson's disease patients, https://doi.org/10.3389/fnhum.2020.521282

Automatic and optimized suggestions of DBS electrode contacts and stimulation amplitudes.

Lead-DBS is a MATLAB-toolbox facilitating deep brain stimulation electrode locations and connectomic imaging.